Medical Superintendent Rural Hospital Vs DCIT (ITAT Pune)
Income Tax Appellate Tribunal (ITAT), Pune Bench, has ruled against the levy of late filing fees under Section 234E of the Income-tax Act, 1961, when processed via intimations under Section 200A of the Act, for periods prior to June 1, 2015. The decision came in a consolidated order addressing appeals from two assessees: Medical Superintendent Rural Hospital and Junagade Healthcare Pvt. Ltd. The Tribunal’s verdict underscores the prospective nature of the amendment to Section 200A, which specifically empowered tax authorities to levy such fees.
Background of the Dispute
The cases involved delays in filing TDS (Tax Deducted at Source) returns in Form 24Q for various quarters spanning assessment years 2013-14, 2014-15, and 2015-16. The Centralized Processing Centre (CPC), TDS, subsequently processed these returns and levied significant late filing fees under Section 234E. For instance, the Medical Superintendent Rural Hospital faced fees ranging from ₹3,000 to ₹1,99,016 across different quarters.
The assessees appealed to the Commissioner of Income-tax (Appeals) [CIT(A)], arguing that while there might have been delays in filing returns, tax payments were timely. They cited difficulties in rural areas regarding transportation and communication, along with a lack of familiarity with income tax provisions. However, the CIT(A) upheld the levy, referencing the legislative intent behind Section 234E (inserted by Finance Act, 2012) to deter delayed filings. The CIT(A) noted that Section 200A was specifically amended by the Finance Act, 2015, effective June 1, 2015, to allow for the levy of Section 234E fees during the processing of TDS returns. Crucially, the CIT(A) reasoned that since the TDS returns were filed and processed after June 1, 2015, the amendment applied, thus validating the late fees. The CIT(A) also cited a decision by the Gujarat High Court to support the Revenue’s position.





