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Strategic Approaches to GST Amnesty Scheme under Section 128-A: A Comprehensive Analysis

Introduction

The Central Government has introduced an amnesty scheme under Section 128A of the Central Goods and Services Tax Act, 2017 (hereinafter referred to as “the CGST Act”) in its continuous endeavour to reduce litigation and facilitate ease of doing business. This scheme, as explained in Circular No. 238/32/2024-GST, offers relief from interest and penalties to taxpayers on the basis of certain conditions. The scheme is a significant opportunity for taxpayers to resolve their tax disputes and the government to collect tax revenue quickly. This article is an attempt to provide a detailed analysis of GST Amnesty Scheme under Section 128A, strategic approaches for different scenarios and the benefits to the taxpayers and the department.

Understanding the Amnesty Scheme

  • Legal Framework

Section 128A of the CGST Act empowers the Government to waive interest and penalty in certain cases. The scheme primarily targets those cases where notices or statements, orders have been issued under Section 73 of the CGST Act, which pertains to non-fraud cases. The fundamental premise of the scheme is that the primary tax demand is not in dispute or has been admitted, and the taxpayer is willing to pay the tax dues. This approach aligns with the government’s broader objective of reducing litigation while ensuring tax compliance.

The Circular elaborately defines the extent and scope of the amnesty scheme in respect of different scenarios. Where there has been a pronouncement order deciding tax liability under Section 73 and there is no appeal, taxpayers may avail the amnesty benefit directly by depositing the tax dues within the specified timeline. For cases where an appeal against an order made under Section 73 stands pending before the Appellate Authority, Tribunal, High Court, or Supreme Court, the taxpayer has to withdraw such an appeal and submit proof of withdrawal for availing the benefits of amnesty.

Significantly, the scheme also extends to situations where an order has already been made by the Appellate Authority or Revisional Authority under Section 107(11) or Section 108(1) in cases where the initial notice was made under Section 73, and no additional appeal has been made to the Tribunal. This specific provision provides a tactical window for taxpayers whose appeals are already concluded but have not sought additional appellate redressal

  • Timelines and Procedural Requirements

The amnesty scheme operates within specific timeframes that taxpayers must strictly adhere to for availing its benefits. The tax dues must be paid on or before March 31, 2025, to qualify for a complete waiver of interest and penalty. Additionally, taxpayers must file a declaration in FORM SPL-2 on or before June 30, 2025. For cases involving pending appeals, proof of withdrawal must accompany the FORM SPL-2 submission. These timelines create a window of opportunity for strategic planning, especially for taxpayers with appeals that have been heard but where orders are still awaited.

Strategic Approaches for Taxpayers-Scenario-Based Analysis:

  • For Cases with Pending Appeals

For taxpayers with pending appeals, a strategic approach necessitates verification. First and foremost, they should conduct a evaluation of their case merits to determine the likelihood of success. This verification should account for legal precedents, strength of evidence, and past rulings in similar matters. Following this assessment, a comprehensive cost-benefit analysis comparing the financial implications of continuing litigation versus availing amnesty becomes essential.

In many situations, a dual-track strategy may prove most advantageous. By paying the tax by March 31, 2025, while maintaining the appeal, taxpayers create a genuinely risk-free position. If the appeal is allowed, the entire tax demand along with interest and penalty will be nullified and  the taxpayer is entitled to complete refund of the tax amount paid. Conversely, if the appeal is dismissed, the taxpayer remains eligible for the interest and penalty waiver under the amnesty scheme. This strategic approach essentially eliminates downside risk while preserving upside potential, providing maximum flexibility while ensuring compliance with the amnesty scheme’s payment timeline. The taxpayer effectively hedges against all possible outcomes, creating what tax practitioners might consider an optimal arbitrage opportunity within the legal framework.

  • For Cases Where Appeal Has Been Heard But Order Is Awaited

This scenario presents a opportunity that merits careful consideration. Taxpayers who have had their appeals heard but are awaiting orders face a temporal uncertainty that can be effectively managed through the amnesty scheme. By paying the tax dues by March 31, 2025, such taxpayers secure their eligibility for interest and penalty waiver regardless of the appeal outcome. They should simultaneously monitor the appeal status.

The subsequent course of action would depend entirely on the appeal outcome. If the appeal is allowed, the demand ( tax+ interest+ penalty) will be  nullified in the liability ledger and the tax payer can apply for refund of tax paid. Conversely, if the appeal is dismissed before June 30, 2025, filing FORM SPL-2 would ensure the waiver of interest and penalty. In situations where the appeal remains undecided as the June 30, 2025 deadline approaches, taxpayers would need to make an informed decision about withdrawal based on their assessment of the probable outcome and the magnitude of interest and penalty at stake.

  • For Cases Where No Appeal Has Been Filed

Taxpayers who have received adjudication orders but have not filed appeals can adopt a straightforward approach. They can directly avail the amnesty benefits by paying the tax dues by March 31, 2025, and filing FORM SPL-2 by June 30, 2025. This direct approach not only secures the interest and penalty waiver but also completely avoids the costly and time-consuming litigation process.

Financial Considerations

When evaluating amnesty options, taxpayers must consider several financial situations. The time value of money is a critical factor, necessitating an assessment of the opportunity cost of paying tax now versus potential future payment with interest. The certainty provided by the amnesty scheme should be weighed against the uncertainty inherent in litigation outcomes, particularly in borderline cases where judicial interpretation could swing either way.

Case Studies

Case Study 1: Pending Appeal with Strong Merits

M/s ABC Ltd. received a demand of ₹10 lakhs plus interest and penalty of ₹10 lakhs under Section 73. The company filed an appeal with strong grounds challenging the very basis of tax demand, and the appeal was heard in January 2025, but the order has not yet been issued. Given the circumstance, the optimal strategic approach would be to pay ₹10 lakhs (basic tax) by March 31, 2025, while continuing with the appeal process.

This strategy creates two possible favorable outcomes. If the appeal is allowed, the company can apply for a refund of the ₹10 lakhs paid. Alternatively, if the appeal is dismissed before June 30, 2025, the company can file FORM SPL-2 to waive interest and penalty of ₹10 lakhs. This approach results in a win-win situation where the Tax Department receives immediate revenue of ₹10 lakhs, while the taxpayer maintains their legal right to challenge the demand while securing protection from interest and penalty.

Case Study 2: Pending Appeal with Weak Merits

M/s XYZ Ltd. is facing a demand of ₹5 lakhs plus interest and penalty of ₹5 lakhs. The company has filed an appeal, but the legal position is not strongly in its favor. With litigation costs estimated at ₹2 lakhs and a low probability of success, the strategic calculus shifts significantly. In this scenario, the optimal approach would be to withdraw the appeal, pay ₹5 lakhs (basic tax) by March 31, 2025, and file FORM SPL-2 by June 30, 2025, with proof of appeal withdrawal.

This approach results in the Tax Department receiving ₹5 lakhs and experiencing a reduction in its litigation burden. From the taxpayer’s perspective, there’s a saving of ₹5 lakhs in interest and penalty plus ₹2 lakhs in litigation costs. Additionally, both parties benefit from improved administrative efficiency as resources are freed from unproductive litigation.

Case Study 3: Appeal Dismissed but Second Appeal Not Filed

M/s PQR Ltd. received a demand of ₹8 lakhs plus interest and penalty of ₹7 lakhs. The company’s appeal to the first appellate authority was dismissed in December 2024, and a second appeal to the Tribunal has not yet been filed. In this scenario, the company might decide against filing the second appeal to the Tribunal, instead opting to pay ₹8 lakhs (basic tax) by March 31, 2025, and file FORM SPL-2 by June 30, 2025.

The outcome of this strategy would be that the Tax Department receives ₹8 lakhs without further litigation, the taxpayer saves ₹7 lakhs in interest and penalty, and there’s an overall reduction in litigation within the system. This case exemplifies how the amnesty scheme can provide a graceful exit from the litigation cycle, particularly after an initial adverse ruling.

Benefits to Stakeholders

Benefits to Taxpayers

The amnesty scheme offers substantial financial relief to taxpayers through a complete waiver of interest and penalty, which sometime equals or exceeds the basic tax amount. Beyond the immediate financial savings, taxpayers benefit from avoiding protracted litigation and its associated costs, including legal fees, management time, and opportunity costs. The closure of tax disputes provides much-needed certainty for business planning and financial forecasting, allowing companies to focus on growth and operations rather than legacy tax issues.

Additionally, resolving tax disputes amicably improves the taxpayer’s compliance record with tax authorities, potentially leading to more favorable treatment in future interactions. Perhaps most significantly, the scheme offers taxpayers the flexibility to adopt strategic approaches based on the merits of each case, allowing for optimization across their entire portfolio of tax disputes.

Benefits to Tax Department

From the tax department’s perspective, the amnesty scheme facilitates immediate revenue generation by expediting the collection of tax dues, thereby improving government cash flow without waiting for the conclusion of lengthy litigation processes. The scheme also enhances administrative efficiency by reducing the litigation burden, allowing for more focused allocation of departmental resources toward enforcement and taxpayer services.

Strategic Recommendations for Taxpayers

Taxpayers should begin by conducting a detailed review of all pending GST demands and their current litigation status. This comprehensive assessment should be followed by careful categorization of cases based on their individual merits, financial impact, and the current stage of litigation. For cases that have been heard but are awaiting orders, implementing a robust system to track appeal status becomes particularly crucial as timelines under the amnesty scheme approach.

Conclusion

The amnesty scheme under Section 128-A of the CGST Act represents a significant opportunity for both taxpayers and the tax department. For taxpayers, it offers substantial financial relief through interest and penalty waivers, along with the closure of potentially protracted disputes. For the department, it ensures early revenue collection and a reduction in the overwhelming litigation burden that has strained administrative resources.

The most strategic approach—particularly for taxpayers with appeals already heard but awaiting orders—is to pay the basic tax by March 31, 2025, while maintaining the appeal. This approach preserves both the possibility of a refund if the appeal is allowed and the certainty of interest and penalty waiver if the appeal is dismissed. The beauty of this strategy lies in its hedging capability, providing protection against adverse outcomes while preserving upside potential.

This scheme exemplifies the government’s commitment to balancing revenue interests with taxpayer relief, moving toward a more collaborative tax administration paradigm. Tax professionals should view this as an opportunity to provide value-added services to clients by developing tailored strategies for each case, considering its unique merits, financial implications, and procedural status.

The success of the amnesty scheme will ultimately depend on the informed decisions made by taxpayers, guided by the expertise of tax professionals who understand both the legal nuances and strategic implications of the amnesty provisions. By approaching the scheme with careful analysis and strategic foresight, taxpayers can optimize outcomes while contributing to the broader goal of reducing tax litigation in the system.

References

1. Section 128-A of the Central Goods and Services Tax Act, 2017

2. Circular No. 238/32/2024-GST dated 15.10.2024

3. Section 73 of the Central Goods and Services Tax Act, 2017

4. Section 54 of the Central Goods and Services Tax Act, 2017 (Refund Provisions)

5. Section 107 of the Central Goods and Services Tax Act, 2017 (Appeals to Appellate Authority)

The article is intended for educational and informational purposes only. Taxpayers are advised to consult with qualified tax professionals before making decisions based on the analysis provided herein.

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