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GSTR-9 and GSTR-9C are critical GST compliance forms with distinct purposes. GSTR-9, filed under Section 44(1) read with Rule 80(1) of the CGST Rules, is an annual return summarizing all GST returns filed during the financial year, applicable to GST-registered persons with a turnover exceeding Rs. 2 crore. In contrast, GSTR-9C, filed under Section 44(1) read with Rule 80(3), is a reconciliation statement comparing the annual return with audited financial statements, mandatory for entities with turnover exceeding Rs. 5 crore. Both forms must be filed electronically by December 31 of the subsequent financial year, with GSTR-9C requiring annexures, including audited financial statements. Certain entities, like composition dealers, non-resident taxable persons, and input service distributors, are exempt from filing these forms. Non-compliance with GSTR-9 attracts late fees based on turnover limits, ranging from Rs. 50 to Rs. 200 per day, subject to a maximum of 0.5% of turnover, while GSTR-9C defaults can lead to a general penalty of Rs. 25,000. Understanding these provisions helps taxpayers fulfill their obligations and avoid penalties.

S. No Basis GSTR 9 GSTR 9C
1 Name Annual Return Reconciliation Statement
2 Filing Section and Rule Section 44(1) of the CGST Act, with Rule 80 (1) of CGST Section 44(1) of the CGST Act, with Rule 80 (3) of CGST
3 Nature consolidation of all GST returns with  bifurcated summary Reconciliation of Value of supplies, ITC and GST paid declared in Annual Return with audited financial statement
3 Applicability GST Registered person Aggregate Turnover exceeding Rs. 2 Crore GST Registered person Aggregate Turnover exceeding Rs. 5 Crore
4 Exemption to  I. Composition Dealers
II. Casual Taxable Person (CTP)
III Non-Resident Taxable Person (NRTP)
IV – Input Service Distributor (ISD)
V – Unique Identification Number (UIN) holders
VI  Online Information and Database Access Retrieval (OIDAR) Service providers
VII  Persons subject to TCS or TDS provisions
5 Due date of filing By 31st December of Next FY By 31st December of Next FY after filing GSTR 9
6 Certification Self certified Self certified
7 Annexures No Annexure Annexures required – Audited Financial Statement
8 Filing mode Electronic filing Electronic filing
9 Non Filing consequences Late fees & penalty* No specific provision, Hence, subject to a general penalty of Rs 25,000
* Late fees and penalty provisions
S. No Turnover limit Late fee per day Maximum late fee
a) Up to Rs 5 crore Rs 50 (Rs 25 each under CGST and SGST Act) 0.04% of turnover in state/UT (0.02% each under CGST and SGST Act)
b) More than Rs 5 crore and less than Rs 20 crore Rs 100 (Rs 50 each under CGST and SGST Act) 0.04% of turnover in state/UT (0.02% each under CGST and SGST Act)
c) More than Rs 20 crore Rs 200 (Rs 100 each under CGST and SGST Act) 0.50% of turnover in state/UT (0.25% each under CGST and SGST Act)

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